Yes and no, 1000 LPH of flow is still 1000 LPH. The idea of the spray bar higher up is to both agitate the surface so causing a larger surface area for gas exchange mainly O2 and then to bring that fresh O2 down to the bottom via the circular motion of the flow.
Having ths spray bar lower down still ciculates the water just not as effcient, I probably have two smaller volumes of ciculation one above the spray bar and one below. I'm still sucking the 'low' O2 water from the bottom of the tank upwards due to the position fo the filter outlet. One other thing I have is a small circulation pump at the bottom of the tank to get flow across the bottom of the tank this means I still get movement in my lower level plants.
I've played around a lot with this as like you my surface plants were causing me a lot of trouble. This method works for me even though it's not the most efficent way. I have lowish light and probably have a touch less CO2 then most. My pH drops about 0.8 rather than the recommend 1. If I bump up the CO2 any more then my rainbows start gasping at the surface so I am at a fine balance and it's taken lots of trial an adjustments to get it to this point.
I would still try the plastic air line taps you can get and see if a slight adjustment of the air flow helps.