So how does this not happen to everyone using these substrates @_Maq_ , is it down to the pH, water hardness or something else?
Frankly, I don't know. I can only guess. There are several points to consider:
(1) Soils from different sources differ from each other. Maybe even soils branded all the same (to hold customers to the brand name) evolve/innovate somehow during time.
(2) I would not underestimate the stuff connected with in-vitro plants. If you don't wash them of all the agar, you invite trouble. Also, in theory, in-vitro plants are free of pests, but we know the reality, it's not always so, and sometimes the killer is invisible but already present. Lately,
@Simon Cole informed me of another bunch of possible problems connected with using phytohormones during in-vitro cultivation.
(3) Many microbes reflect pH somehow. In general, pH between 7 and 8 is considered best for breeding unspecified bacteria. Yet there are exemptions, specialists... and then consider all their possible combinations!
(4) Microbes remain quite mysterious, all the same. Including protists and microalgae. They sometimes appear and then disappear for reasons we can hardly discern. I think it's partially subject to pure chance, too. A new tank is an uncolonized land to them, full of promises. Those which arrive first, proliferate quickly, facing little competition. Depending on which ones they are, they somehow influence their environment for a long time after. Can you get the point? Both cows and hares eat the grass, but their impact on the rest of the world (biotope) is different. After a period of time, all meadows develop complete and balanced fauna, not only cows and hares, but also rodents, foxes, wolves, falcons... The system gets complete and stabilized. But it takes time.
So, I truly don't know. Even with carefully washed silica sand and patient cycling without plants, tank starts are often difficult and I suffer painful losses. Hell, I do! I'm not the kind of wizard who solved these troubles once and for all. But experience taught me to be always wary of organic pollutants. I support their faster degradation by oxygenation & water current, I often apply activated carbon or Purigen, and of course, water changes are a must, the more so the younger the tank is. Only after roughly 6 to 12 months things usually get somehow 'settled'.