Well, only a high concentration of herbicide or water very high in organic waste, or a too high concentration of liquid carbon would interfere with CO2 uptake. There really is nothing else. Barr has estimated that about 95% of all problems in the planted tank is CO2 related, so as far as I'm concerned, you should be focusing 95% of your attention on CO2 availability.
As I mentioned, if you can do very large water changes and if you can wipe the biofilm off the surface of the leaves, either while they are exposed to air or while submerged, you can go a long way in reducing the obstacles to CO2 uptake. CO2 has a 10,000X poorer ability to move through water than it does through air. That's why plants living in air seldom, if ever have a CO2 deficiency, and why plants that are flooded ALWAYS have a CO2 problem. Stick your hand in the tank and rub the leaves between your thumb & fingers. Is there a slimy coating? Keep rubbing until the slime wipes off. That is major barrier number one.
There are as many ways to have poor CO2 as there are hobbyists, and yes it does drive people crazy, but once you understand the extreme difficulty that CO2 has finding it's way into a leaf you'll concentrate harder on finding ways to help the plant.
Cheers,